How can we create a seurat object using the expression matrix files posted here?

Yojet Sharma

• March 06, 2023 14:58

I would like to use some of the datasets as a reference for cluster annotation of my scRNA dataset. However, I am unable to work out how to use these expression matrix to create a seurat object which has cluster, tsne/umap information embedded in it. 

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  Jean Chang

  • March 30, 2023 16:40

  Hi Yojet Sharma,

  Apologies for not noticing this post earlier (usage of this "community" functionality is new to SCP!).
  
  We have some example code for generating a Seurat object from SCP expression matrix files and a corresponding Rmarkdown file so you can see what the process looks like.

  We'll try to keep a closer eye out for posts in the "community"  section - if you need our attention more quickly, you can email scp-support@broadinstitute.zendesk.com.

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