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  1. Single Cell Portal
  2. Setting up an SCP study
  3. Adding study files to enable data visualization

Adding study files to enable data visualization

Single Cell Portal generates visualizations using information from three key study files: processed matrix, metadata and cluster files.

  • Metadata file
  • Upload data in AnnData mode
  • Key study files depend on unique NAMEs to enable visualizations
  • Expression matrix files
  • Cluster files
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