Jean Chang
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Articles
Recent activity by Jean Chang-
Filter plotted cells
"Filter plotted cells" allows the subsetting of visualized cells using multiple variables of interest to leverage rich metadata annotations provided by the study owner. In addition to this written...
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Collections overview
Collections in Single Cell Portal provide a cohesive view of studies from specific consortia, projects, and labs. A single URL can now guide researchers to a curated body of research, the Collectio...
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Edit collection
Collections can be customized to reflect the style and iconography of the scientific group presenting the represented body of work. An external URL can be added to the "Help and Resources" dropdown...
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Add study to collection
To add a study to a collection, a collection curator must either be the study owner or have been granted "edit" permission to access the study, and follow steps described below. 1. From the user ...
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Legacy metadata file format
The legacy SCP metadata file format is a tab-delimited file with one required column and two required rows. Columns: The first column is required and contains cell names; one should include all cel...
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Adding large files with gcloud CLI
Single cell experiments can produce large analysis files (expression matrices, AnnData/Seurat files etc). Primary data, like FASTQ files, may also be large in file size or in number. High file coun...