SCP Support
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Activity overview
Latest activity by SCP Support-
SCP Support created an article,
Bookmarks
Single Cell Portal enables the discovery and exploration of many datasets. Upon visiting SCP, you may find an interesting view of the data you'd like to return to or share with a colleague. Or you ...
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SCP Support commented,
Official comment Thanks for your interest in SCP datasets. Public data in Single Cell Portal (SCP) can be downloaded through SCP's APIs or through the UI in accordance with the standard access available to all user...
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SCP Support commented,
Official comment Guarav - Thanks for writing in with this. It is possible to request a 1-day exemption for the download quota in order to export very large datasets. If you email the help desk (scp-support@broadi...
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SCP Support created an article,
Uploading Data in AnnData Mode
How to upload data during study creation The following guide assumes you have chosen the AnnData upload experience. Step 1. Fill in the Expression matrices form fields Select the species for the f...
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SCP Support created an article,
Exploratory differential gene expression analysis
Exploratory differential expression (DE) analysis can be performed in Single Cell Portal to look for genes that drive differences between distinctly annotated clusters of cells in a study. For exam...
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SCP Support created an article,
Key study files depend on unique NAMEs to enable visualizations
Single Cell Portal generates visualizations using information from three key study files: processed matrix, metadata and cluster files. This article covers: NAME Metadata file Cluster/spatial file...
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SCP Support created an article,
Commonly requested study details
Study summary content Researchers exploring studies in SCP often seek the following information in studies: A primary point of contact and email contact To handle privacy concerns, consider creat...
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SCP Support created an article,
Link to your publication
External Resource links Researchers exploring studies in SCP often seek the following information in studies: Publication information SCP provides a way to add a button in the study summary to l...
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SCP Support created an article,
Use the SCP Accession URL in your publication
SCP Accession URLs Include your SCP study URL in your paper to publicize your science! Researchers who read your paper can follow the link to your study, perform interactive visualization, and expl...
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SCP Support created an article,
Reviewer access
Granting reviewer access Pre-publication studies often start as private studies. To grant reviewers access to a private study, SCP has a "Reviewer Access" feature that enables publication reviewers...